Scientific Publications

Plant Proteomics and Systems Biology

Riano-Pachon DM, Kleesen S, Neigenfind J, Durek P, Weber E, Engelsberger WR, Walther D, Selbig J, Schulze WX, Kersten B (2010) Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana. BMC Genomics 11: 411

Durek P, Schmidt R, Heazlewood JL, Jones A, MacLean D, Nagel A, Kersten B, Schulze WX (2010) PhosPhAt: The Arabidopsis thaliana phosphorylation site database. An update. Nucleic Acids Research 38: D828-834

Piques MC, Schulze WX, Höhne M, Gibon Y, Rohwer J, Stitt M (2009) Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis. Molecular Systems Biology 5 (314): E1-E17

Pertl H, Schulze WX, Obermeyer G (2009) The pollen organelle membrane proteome reveals highly spatial-temporal dynamics during germination and tube growth. Journal of Proteome Research 8 (11): 5142-5152

Kierszniowska S, Seiwert B, Schulze WX (2009) Definition of Arabidopsis sterol-rich membrane microdomains by differential treatment with methyl-ß-cyclodextrin and quantitative proteomics. Molecular and Cellular Proteomics 8 (4): 612-623

Heazlewood JL, Durek P, Hummel J, Selbig J, Weckwerth W, Walther D, Schulze WX (2008) PhosPhAt: A Database of phosphorylation sites in Arabidopsis thaliana and a plant specific phosphorylation site predictor. Nucleic Acids Research 36: D1015-D1021

Niittylä T, Fuglsang AT, Palmgren MG, Frommer WB, Schulze WX (2007) Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis. Molecular and Cellular Proteomics 6 (10): 1711-1726

Hummel J, Niemann M, Wienkoop S, Schulze W, Steinhauser D, Selbig J, Walther D, Weckwerth W (2007) ProMEX: a maß spectral reference database for proteins and protein phosphorylation sites. BMC Bioinformatics 8: 216-223

Proteomics Methods and Concepts

Kierszniowska S, Walther D, Schulze WX (2009) Ratio-dependent significance thresholds in reciprocal 15N-labeling experiments as a robust tool in detection candidate proteins responding to biological treatment. Proteomics 9 (7): 1916-1924

Engelsberger WR, Erban A, Kopka J, Schulze WX (2006) Metabolic labeling of plant cell cultures with K15NO3 as a tool for quantitative analysis of proteins and metabolites. Plant Methods 2 (14): 1-11

Gruhler A, Schulze WX, Matthisen R, Mann M, Jensen ON (2005) Stable isotope labeling of Arabidopsis thaliana cells and quantitative proteomics by mass spectrometry. Molecular and Cellular Proteomics 4: 1697-1702

Schulze WX (2005) Protein analysis in dissolved organic carbon: What proteins from organic debris, soil leachates and surface waters can tell us - a perspective. Biogeosciences 2: 75-86

Schulze WX, Gleixner G, Kaiser K, Guggenberger G, Mann M, Schulze ED (2005) A proteomic fingerprint of dissolved organic carbon and soil particles. Oecologia 143 (3): 335-343

Schulze WX, Deng L, Mann M (2005) Phosphotyrosine interactome of the ErbB-receptor kinase family. Molecular Systems Biology 1(5): E1-E13

Schulze WX, Mann M (2004) A novel proteomic screen for peptide-protein interactions. Journal of Biological Chemisty 279(11): 10756-10764

Nutrient Transport and Sensing

Lanquar V, Loque D, Hörmann F, Yuan L, Bohner A, Engelsberger WR, Lalonde S, Schulze WX, von Wiren N, Frommer WB (2009) Feedback inhibition of ammonium uptake by a phospho-dependent allosteric mechanism. The Plant Cell 21 (11): 3610-3622

Schulze WX, Reinders A, Ward JM, Lalonde S, Frommer WB (2003) Interactions between co-expressed Arabidopsis sucrose transporters in the split-ubiquitin system. BMC Biochemistry 4: 3

Reinders A, Schulze W*, Kühn C*, Barker L, Ward J, Frommer WB (2002) Protein-protein interactions between sucrose transporters of different affinities co-localized in the same enucleate sieve element. The Plant Cell 14 (7): 1567-1577
*equal contribution

Schulze W*, Reinders A*, Thaminy S, Stagljar I, Frommer WB, Ward JM (2002) Intra- and intermolecular interactions in sucrose transporters at the plasma membrane detected by the split-ubiquitin system and functional assays. Structure 10 (6): 763-772
*equal contribution

Barker L, Kühn C, Weise A, Schulz A, Gebhardt C, Hirner B, Hellmann H, Schulze W, Ward JM, Frommer WB (2000) SUT2, a Putative Sucrose Sensor in Sieve Elements. The Plant Cell 12 (7): 1153-1164

Schulze W, Weise A, Frommer WB, Ward JM (2000) Function of the cytosolic N-terminus of sucrose transporter AtSUT2 in substrate affinity. FEBS Letters 485: 189-194

Carbon Metabolism in Arabidopsis

Schulze W, Schulze ED, Stadler J, Heilmeier H, Stitt M, Mooney HA (1994) Growth and reproduction of Arabidopsis thaliana in relation to storage of starch and nitrate in the wild-type and in starch deficient and nitrate-uptake-deficient mutants. Plant, Cell and Environment 17: 795-809

Schulze W, Stitt M, Schulze ED, Neuhaus HE, Fichtner K (1991) A quantification of the significance of assimilatory starch for growth of Arabidopsis thaliana L. Heynh. Plant Physiology 95 (3): 890-895

Schulze W (1991) Assimilationsstärke fördert das Wachstum von Arabidopsis thaliana. Junge Wissenschaft 22 (6): 36-42

Carnivorous Plants

Schulze W, Schulze ED, Schulze I, Oren R (2001) Quantification of insect nitrogen utilization by the venus fly trap Dionaea muscipula catching prey with highly variable isotope signatures. Journal of Experimental Botany 52 (358): 1041-1049

Schulze W, Frommer WB, Ward JM (1999) Transporters for ammonium, amino acids and peptides are expressed in pitchers of the carnivorous plant Nepenthes. The Plant Journal 17 (6): 637-646

Schulze W, Schulze ED, Pate JS, Gillison AN (1997) The nitrogen supply from soils and insects during growth of the pitcher plants Nepenthes mirabilis, Cephalotus follicularis and Darlingtonia californica. Oecologia 112: 464-471

Schulze ED, Gebauer G, Schulze W, Pate JS (1991) The utilization of nitrogen from insect capture by different growth fors of Drosera from southwest Australia. Oecologia 87: 240-246

Schulze W (1991) Das Experiment: Versuche mit insektenfangenden Pflanzen. Biologie in Unserer Zeit 21 (6): 307-312

Schulze W, Schulze ED (1990) Insect capture and growth of the insectivorous Drosera rotundifolia L. Oecologia 82: 427-429

Plant Ecology

Wirth C, Schulze ED, Schulze W, von Stünzner-Karbe D, Ziegler W, Miljukova IM, Sogatchev A, Varlagin AB, Panvyorov M, Grigoriev S, Kusnetzova W, Siry M, Hardes G, Zimmermann R, Vygodskaya NN (1999) Above-ground biomass and structure of pristine Siberian Scots pine forests as controlled by competition and fire. Oecologia 121: 66-80

Schulze ED, Lloyd, J, Kelliher FM, Wirth C, Rebmann C, Lühker B, Mund M, Milykova I, Schulze W, Ziegler, Varlagin A, Valentini R, Dore S, Grigoriev S, Kolle O, Vygodskaya NN (1999) Productivity of forests in the Eurosiberian boreal region and their potential to act as a carbon sink - A synthesis. Global Change Biology 5: 703-722

Schulze ED, Farquhar GD, Miller JM, Schulze W, Walker BH, Williams RJ (1999) Interpretation of increased foliar d15N in woody species along a rainfall gradient in northern Australia. Australian Journal of Plant Physiology 26: 296-298

Schulze ED, Williams R, Farquhar GD, Schulze W, Langridge J, Miller J, Walker B (1998) Carbon and nitrogen isotope discrimination and nitrogen nutrition of trees along a rainfall gradient in northern Australia. Australian Journal of Plant Physiology 25: 413-425

Schulze ED, Ellis R, Schulze W, Trimborn P, Ziegler H (1996) Diversity of metabolic types and d13C carbon isotope ratios in the grass flora of Namibia in relation to growth form, precipitation and habitat conditions. Oecologia 106: 352-369

Schulze ED, Schulze W, Kelliher FM, Vygodskaya NN, Ziegler W, Kobak I, Koch H, Arneth A, Kusnetsova WA, Sogatchev A, Issajev A, Bauer G, Hollinger DY (1995) Aboveground biomass and nitrogen nutrition in a crhonosequence of pristine Dahurian Larix stands in eastern Siberia. Canadian Journal of Forest Research 25: 943-960

Reviews and Book Chapters

Schulze WX (2010) Proteomic approaches to understand protein phosphorylation in pathway modulation. Current Opinion in Plant Biology 13: 1-8

Schulze WX, Usadel B (2010) Quantitation in Mass-Spectrometry-Based Proteomics. Annual Review of Plant Biology. 61: 491-516

Kersten, B, Agrawal, GK, Durek P, Neigenfind J, Schulze W, Walther D, Rakwal R (2009) Plant phosphoproteomics: An update. Proteomics 9: 964-988

Schulze W (2008) Mass spectrometry based proteomics as a tool for the analysis of protein-protein interactions in signaling processes. In: Bögre L, Beemster TGS (eds.) Plant Cell Monographs: Plant Growth Signalling. Springer Verlag, Berlin.

Frommer WB, Schulze WX, Lalonde S (2003) Hexokinase, Jack-of-all-trades. Science 300: 261-263

Schulze W, and Schulze ED (1994) The significance of assimilatory starch for growth in Arabidopsis thaliana wild-type and starchless mutants. In: Schulze ED and Caldwell MM (eds.) Ecological Studies Volume 100: Ecophysiology of Photosynthesis. Springer Verlag, Berlin

Collaborative Work

Rogalski M, Schöttler MA, Thiele W, Schulze WX, Bock R (2008) Rpl33, a nonessential plastid-encoded ribosomal protein in tobacco, is required under cold stress conditions. The Plant Cell 20 (8): 2221-2237

Erba EB, Matthisen R, Bunkenborg J, Schulze WX, Di Stefano P, Cabodi S, Tarone G, Defilippi, P, Jensen ON (2007) Quantitation of multisite EGF receptor phosphorylation using maß spectrometry and a novel normalization approach. Journal of Proteome Research 6 (7): 2768-2785